seqMINER: an integrated ChIP-seq data interpretation platform
seqMINER is an integrated portable ChIP-seq data interpretation platform, with optimized performances for efficient handling of multiple genome-wide datasets. seqMINER allows comparison and integration of multiple ChIP-seq datasets and extraction of qualitative as well as quantitative information. seqMINER can handle the biological complexity of most experimental situations and proposes methods to the user for data classification according to the analyzed features. In addition, through multiple graphical representations, seqMINER allows visualization and modelling of general as well as specific patterns in a given dataset.
seqMINER: an integrated ChIP-seq data interpretation platform. Ye T, Krebs AR, Choukrallah MA, Keime C, Plewniak F, Davidson I, Tora L. Nucleic Acids Res. 2011;39(6):e35.
Interpreting and visualizing ChIP-seq data with the seqMINER software. Ye T, Ravens S, Krebs AR, Tora L. Methods Mol Biol. 2014;1150:141-52. doi: 10.1007/978-1-4939-0512-6_8. PubMed PMID: 24743995.
Availability and Implementation: seqMINER is implemented in Java, supported on all systems with JVM, and distributed under the GPLv3 License.
Website: http://bips.u-strasbg.fr/seqminer
seqMINER source code is available on GitHub:
https://sourceforge.net/projects/seqminer/
Contact: yetao@igbmc.fr
