Publications
Pratx L et al.
Genome-wide expert annotation of the epigenetic machinery of the plant-parasitic nematodes Meloidogyne spp., with a focus on the asexually~reproducing species
BMC Genomics 2018 19(1)
doi: 10.1186/s12864-018-4686-x
Boher P et al.
A comparative transcriptomic approach to understanding the formation of cork
Plant Molecular Biology 2017 96(1-2)
doi: 10.1007/s11103-017-0682-9
Coleman RA et al.
Artificial barriers prevent genetic recovery of small isolated populations of a low-mobility freshwater fish
Heredity 2018 120(6)
doi: 10.1038/s41437-017-0008-3
Gruening B et al.
Recommendations for the packaging and containerizing of bioinformatics software
F1000Research 2018 7
doi: 10.12688/f1000research.15140.1
Gschloessl B et al.
De novo genome and transcriptome resources of the Adzuki bean borer Ostrinia scapulalis (Lepidoptera: Crambidae)
Data in Brief 2018 17
doi: 10.1016/j.dib.2018.01.073
Batut B et al.
Community-driven data analysis training for biology
Cold Spring Harbor Laboratory 2017
doi: 10.1101/225680
Guyomar C et al.
Multi-scale characterization of symbiont diversity in the pea aphid complex through metagenomic approaches
Microbiome 2018 6(1)
doi: 10.1186/s40168-018-0562-9
Darde TA et al.
The ReproGenomics Viewer: a multi-omics and cross-species resource compatible with single-cell studies for the reproductive science community
Bioinformatics 2019
doi: 10.1093/bioinformatics/btz047
Darde TA et al.
TOXsIgN: a cross-species repository for toxicogenomic signatures
Bioinformatics 2018 34(12)
doi: 10.1093/bioinformatics/bty040
Jaquiéry J et al.
Disentangling the Causes for Faster-X Evolution in Aphids
Genome Biology and Evolution 2018 10(2)
doi: 10.1093/gbe/evy015
Rainer Borriss R et al.
Bacillus subtilis,
the model Gram-positive bacterium: 20 years of annotation refinement
Microbial Biotechnology 2017 11(1)
doi: 10.1111/1751-7915.13043
Gobet A et al.
Evolutionary Evidence of Algal Polysaccharide Degradation Acquisition by Pseudoalteromonas carrageenovora 9T to Adapt to Macroalgal Niches
Frontiers in Microbiology 2018 9
doi: 10.3389/fmicb.2018.02740
Turpin W et al.
The genomic and transcriptomic basis of the potential of Lactobacillus plantarum A6 to improve the nutritional quality of a cereal based fermented food
International Journal of Food Microbiology 2018 266
doi: 10.1016/j.ijfoodmicro.2017.10.011
Belkhelfa S et al.
Complete Genome Sequence of the Facultative Methylotroph
Methylobacterium extorquens
TK 0001 Isolated from Soil in Poland
Genome Announcements 2018 6(8)
doi: 10.1128/genomeA.00018-18
Desroches M et al.
The Odyssey of the Ancestral Escherich Strain through Culture Collections: an Example of Allopatric Diversification
mSphere 2018 3(1)
doi: 10.1128/mSphere.00553-17
Duchemin W et al.
RecPhyloXML: a format for reconciled gene trees
Bioinformatics 2018 34(21)
doi: 10.1093/bioinformatics/bty389
Branger C et al.
Extended-spectrum $p?beta$-lactamase-encoding genes are spreading on a wide range of Escherichia coli plasmids existing prior to the use of third-generation cephalosporins
Microbial Genomics 2018 4(9)
doi: 10.1099/mgen.0.000203
Royer G et al.
PlaScope: a targeted approach to assess the plasmidome from genome assemblies at the species level
Microbial Genomics 2018 4(9)
doi: 10.1099/mgen.0.000211
Bastard K et al.
Structural Studies based on two Lysine Dioxygenases with Distinct Regioselectivity Brings Insights Into Enzyme Specificity within the Clavaminate Synthase-Like Family
Scientific Reports 2018 8(1)
doi: 10.1038/s41598-018-34795-9
Mercier J et al.
GROOLS: reactive graph reasoning for genome annotation through biological processes
BMC Bioinformatics 2018 19(1)
doi: 10.1186/s12859-018-2126-1
Monteil CL et al.
Genomic study of a novel magnetotactic
Alphaproteobacteria
uncovers the multiple ancestry of magnetotaxis
Environmental Microbiology 2018 20(12)
doi: 10.1111/1462-2920.14364
Partensky F et al.
A novel species of the marine cyanobacterium Acaryochloris with a unique pigment content and lifestyle
Scientific Reports 2018 8(1)
doi: 10.1038/s41598-018-27542-7
Proust L et al.
Complete Genome Sequence of the Industrial Fast-Acidifying Strain Streptococcus thermophilus N4L
Microbiology Resource Announcements 2018 7(8)
doi: 10.1128/MRA.01029-18
Popova M et al.
Changes in the Rumen Microbiota of Cows in Response to Dietary Supplementation with Nitrate, Linseed, and Saponin Alone or in Combination
Applied and Environmental Microbiology 2018 85(4)
doi: 10.1128/AEM.02657-18
Poirier S et al.
Detection of an amplification bias associated to Leuconostocaceae family with a universal primer routinely used for monitoring microbial community structures within food products
BMC Research Notes 2018 11(1)
doi: 10.1186/s13104-018-3908-2
Poirier S et al.
Deciphering intra-species bacterial diversity of meat and seafood spoilage microbiota using gyrB amplicon sequencing: A comparative analysis with 16S rDNA V3-V4 amplicon sequencing
PLOS ONE 2018 13(9)
doi: 10.1371/journal.pone.0204629
Liu W et al.
Assessment of Bona Fide sRNAs in Staphylococcus aureus
Frontiers in Microbiology 2018 9
doi: 10.3389/fmicb.2018.00228
Loux V et al.
Complete and Draft Genome Sequences of Nine Lactobacillus sakei Strains Selected from the Three Known Phylogenetic Lineages and Their Main Clonal Complexes
Genome Announcements 2018 6(16)
doi: 10.1128/genomeA.00082-18
Pleydell DRJ et al.
Estimation of the dispersal distances of an aphid-borne virus in a patchy landscape
PLOS Computational Biology 2018 14(4)
doi: 10.1371/journal.pcbi.1006085
Duchaud E et al.
Genomic Diversity and Evolution of the Fish Pathogen Flavobacterium psychrophilum
Frontiers in Microbiology 2018 9
doi: 10.3389/fmicb.2018.00138