Publications
Keller J et al.
RNA sequencing and analysis of three Lupinus nodulomes provide new insights into specific host-symbiont relationships with compatible and incompatible Bradyrhizobium strains
Plant Science 2018 266
doi: 10.1016/j.plantsci.2017.10.015
Teyssier A et al.
Inside the guts of the city: Urban-induced alterations of the gut microbiota in a wild passerine
Science of The Total Environment 2018 612
doi: 10.1016/j.scitotenv.2017.09.035
Segura A et al.
Factors Involved in the Persistence of a Shiga Toxin-Producing Escherichia coli O157:H7 Strain in Bovine Feces and Gastro-Intestinal Content
Frontiers in Microbiology 2018 9
doi: 10.3389/fmicb.2018.00375
Schroeder H et al.
Origins and genetic legacies of the Caribbean Taino
Proceedings of the National Academy of Sciences 2018 115(10)
doi: 10.1073/pnas.1716839115
Viricel C et al.
Cost function network-based design of proteinprotein interactions: predicting changes in binding affinity
Bioinformatics 2018 34(15)
doi: 10.1093/bioinformatics/bty092
Charrier NP et al.
Whole body transcriptomes and new insights into the biology of the tick Ixodes ricinus
Parasites & Vectors 2018 11(1)
doi: 10.1186/s13071-018-2932-3
Brousseau L et al.
New WGS data and annotation of the heterosomal vs. autosomal localization of Ostrinia scapulalis (Lepidoptera, Crambidae) nuclear genomic scaffolds
Data in Brief 2018 20
doi: 10.1016/j.dib.2018.08.011
Ledoux JB et al.
Postglacial range expansion shaped the spatial genetic structure~in a marine habitat-forming species: Implications for conservation plans in the Eastern Adriatic Sea
Journal of Biogeography 2018 45(12)
doi: 10.1111/jbi.13461
Zinger L et al.
Body size determines soil community assembly in a tropical forest
Molecular Ecology 2018 28(3)
doi: 10.1111/mec.14919
Ohlmann M et al.
Mapping the imprint of biotic interactions on $p?beta$-diversity
Ecology Letters 2018 21(11)
doi: 10.1111/ele.13143
Pratx L et al.
Genome-wide expert annotation of the epigenetic machinery of the plant-parasitic nematodes Meloidogyne spp., with a focus on the asexually~reproducing species
BMC Genomics 2018 19(1)
doi: 10.1186/s12864-018-4686-x
Boher P et al.
A comparative transcriptomic approach to understanding the formation of cork
Plant Molecular Biology 2017 96(1-2)
doi: 10.1007/s11103-017-0682-9
Coleman RA et al.
Artificial barriers prevent genetic recovery of small isolated populations of a low-mobility freshwater fish
Heredity 2018 120(6)
doi: 10.1038/s41437-017-0008-3
Gruening B et al.
Recommendations for the packaging and containerizing of bioinformatics software
F1000Research 2018 7
doi: 10.12688/f1000research.15140.1
Gschloessl B et al.
De novo genome and transcriptome resources of the Adzuki bean borer Ostrinia scapulalis (Lepidoptera: Crambidae)
Data in Brief 2018 17
doi: 10.1016/j.dib.2018.01.073
Batut B et al.
Community-driven data analysis training for biology
Cold Spring Harbor Laboratory 2017
doi: 10.1101/225680
Guyomar C et al.
Multi-scale characterization of symbiont diversity in the pea aphid complex through metagenomic approaches
Microbiome 2018 6(1)
doi: 10.1186/s40168-018-0562-9
Darde TA et al.
The ReproGenomics Viewer: a multi-omics and cross-species resource compatible with single-cell studies for the reproductive science community
Bioinformatics 2019
doi: 10.1093/bioinformatics/btz047
Darde TA et al.
TOXsIgN: a cross-species repository for toxicogenomic signatures
Bioinformatics 2018 34(12)
doi: 10.1093/bioinformatics/bty040
Jaquiéry J et al.
Disentangling the Causes for Faster-X Evolution in Aphids
Genome Biology and Evolution 2018 10(2)
doi: 10.1093/gbe/evy015
Rainer Borriss R et al.
Bacillus subtilis,
the model Gram-positive bacterium: 20 years of annotation refinement
Microbial Biotechnology 2017 11(1)
doi: 10.1111/1751-7915.13043
Gobet A et al.
Evolutionary Evidence of Algal Polysaccharide Degradation Acquisition by Pseudoalteromonas carrageenovora 9T to Adapt to Macroalgal Niches
Frontiers in Microbiology 2018 9
doi: 10.3389/fmicb.2018.02740
Turpin W et al.
The genomic and transcriptomic basis of the potential of Lactobacillus plantarum A6 to improve the nutritional quality of a cereal based fermented food
International Journal of Food Microbiology 2018 266
doi: 10.1016/j.ijfoodmicro.2017.10.011
Belkhelfa S et al.
Complete Genome Sequence of the Facultative Methylotroph
Methylobacterium extorquens
TK 0001 Isolated from Soil in Poland
Genome Announcements 2018 6(8)
doi: 10.1128/genomeA.00018-18
Desroches M et al.
The Odyssey of the Ancestral Escherich Strain through Culture Collections: an Example of Allopatric Diversification
mSphere 2018 3(1)
doi: 10.1128/mSphere.00553-17
Duchemin W et al.
RecPhyloXML: a format for reconciled gene trees
Bioinformatics 2018 34(21)
doi: 10.1093/bioinformatics/bty389
Branger C et al.
Extended-spectrum $p?beta$-lactamase-encoding genes are spreading on a wide range of Escherichia coli plasmids existing prior to the use of third-generation cephalosporins
Microbial Genomics 2018 4(9)
doi: 10.1099/mgen.0.000203
Royer G et al.
PlaScope: a targeted approach to assess the plasmidome from genome assemblies at the species level
Microbial Genomics 2018 4(9)
doi: 10.1099/mgen.0.000211
Bastard K et al.
Structural Studies based on two Lysine Dioxygenases with Distinct Regioselectivity Brings Insights Into Enzyme Specificity within the Clavaminate Synthase-Like Family
Scientific Reports 2018 8(1)
doi: 10.1038/s41598-018-34795-9
Mercier J et al.
GROOLS: reactive graph reasoning for genome annotation through biological processes
BMC Bioinformatics 2018 19(1)
doi: 10.1186/s12859-018-2126-1