Bioinformatique

Ali Hamraoui et al.
AsaruSim: a single-cell and spatial RNA-Seq Nanopore long-reads simulation workflow
Bioinformatics 2025, vol. 41, issue 3
doi: 10.1093/bioinformatics/btaf087

Arthur Monjot et al.
Metatranscriptomes-based sequence similarity networks uncover genetic signatures within parasitic freshwater microbial eukaryotes
Microbiome 2025, vol. 13, issue 1
doi: 10.1186/s40168-024-02027-0

Alexandra Cerqueira de Araujo et al.
Genome sequences of four Ixodes species expands understanding of tick evolution
BMC Biology 2025, vol. 23, issue 1
doi: 10.1186/s12915-025-02121-1

Kaj Chokeshaiusaha et al.
Development of a deep learning-based 1D convolutional neural network model for cross-species natural killer T cell identification using peripheral blood mononuclear cell single-cell RNA sequencing data
Veterinary World 2024
doi: 10.14202/vetworld.2024.2846-2857

Anthony F Herzig et al.
SURFBAT: a surrogate family based association test building on large imputation reference panels
G3: Genes, Genomes, Genetics 2024
doi: 10.1093/g3journal/jkae287

Laure Lemée et al.
Check My Sample Sheet: a Web Application for Validating Illumina Sample Sheets Before Demultiplexing
2024
doi: 10.21203/rs.3.rs-5268893/v1

Lisa Mazéas et al.
Candidate genes involved in biosynthesis and degradation of the main extracellular matrix polysaccharides of brown algae and their probable evolutionary history
BMC Genomics 2024, vol. 25, issue 1
doi: 10.1186/s12864-024-10811-3

Ali Hamraoui et al.
AsaruSim: a single-cell and spatial RNA-Seq Nanopore long-reads simulation workflow
2024
doi: 10.1101/2024.09.20.613625

Jean Mainguy et al.
metagWGS, a comprehensive workflow to analyze metagenomic data using Illumina or PacBio HiFi reads
2024
doi: 10.1101/2024.09.13.612854

Marinna Gaudin et al.
Ecological associations distribution modelling of marine plankton at a global scale
Philosophical Transactions of the Royal Society B: Biological Sciences 2024, vol. 379, issue 1909
doi: 10.1098/rstb.2023.0169