ToulligQC: AN AUTOMATED QC PIPELINE FOR ONT RUNS
ToulligQC is dedicated to the QC analyses of Oxford Nanopore runs. This software is written in Python and developped by the GenomiqueENS core facility of the Institute of Biology of the Ecole Normale Superieure (IBENS).
This tool will produce a set of graphs, statistic file in plain text format and a HTML report using the sequencing summary and sequencing telemetry files generated by Guppy, the official ONT basecaller.
ToulligQC is adapted to RNA-Seq along with DNA-Seq and it is compatible with 1D² runs. ToulligQC can also take barcoding samples by adding the barcode list as a command line option.
Web site : https://genomique.biologie.ens.fr/fr/equipements_et_outils/outils_d_analyse/
ToulligQC source code is available on GitHub :
https://github.cGenomiqueENS/toulligQC
Contact : jourdren@biologie.ens.fr